Optimal alignment of two Sequence

In Progress Posted 5 years ago Paid on delivery
In Progress Paid on delivery

Write a program that calculates the similarity of two nucleotide sequences and their best global alignment for the following cases:

a) in a model with an arbitrary gap penalty function (this function should be set in the code; should also work for non-linear functions!),

b) in a model without a gap penalty function, but using an algorithm of linear memory complexity.

Data should be read from a file.

Data includes 2 sequences and similarity matrix between nucleotides.

The output of the program should contain the optimal alignment and its similarity

the program should written in java

Java

Project ID: #18356519

About the project

2 proposals Remote project Active 5 years ago

2 freelancers are bidding on average $170 for this job

liangjongai

Hi! I'm interesting your project very well. I am a full time developer and i can work more than 10 hours in a day. I am good at Java and I'm a good Engineer. And also I have many experience and good skill about algori More

$200 USD in 3 days
(264 Reviews)
7.7
theodorent

Hello, I would love to work on your project. I have developed many java apps, and I am confident I can exceed your expectations. I’m glad to answer any questions you may have! Thank you for your time, Theodore.

$140 USD in 10 days
(3 Reviews)
2.2